Index

Implementation of property markers (e.g. charge mark, lone pair, etc.) binding to the chem object.

Implementation of some concrete property markers (e.g. charge mark, lone pair, etc.) binding to the chem object.

Implementation of text/rich text block in 2D drawing.

Defines glyphs used in 2D/3D drawing.

Glyphs of some chem symbols.

Implementation of line based glyphs defined by a series of nodes and paths.

Implementation of glyphs defined by a series of nodes and paths.

Utils method about chem objects.

Classes used for store configurations.

This file contains basic classes related with electrons (bond, lone pair...).

This file contains basic classes to represent an element or isotope.

This file contains basic classes about chemical reactions.

Classes and utils to help to build a chemical structure (such as molecule).

This file contains basic classes to represent structural objects in molecule.

This file helps to determine the valence of a neutral, anion(-) or cation(+) atom.

Classes and functions related with native services (e.g., file picker dialog).

Utils and classes to load chem resources embedded or linked in HTML page. The chem resources (usually a formatted file (.mol, .cml...) or a formatted string) can be embedded in <script> tag:

<script id="chem1" type="chemical/x-mdl-molfile">
Untitled Document-1
ChemDraw09151219572D

2  1  0  0  0  0  0  0  0  0999 V2000
 -0.4125    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  0.4125    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
1  2  1  0
M  END
</script>

or linked in by <script> or <link> tag as the follows:
<script id="chem2" type="chemical/x-kekule-json" src="externalMol.kcj"></script>
<link id="chem3" type="chemical/x-cml" href="external.cml" /> Afterwards, user can ref to chem resource by ID directly in HTML code, such as:
<div data-kekule-role="Kekule.ChemWidget.Viewer2D" data-chem-obj="url(#chem1)" /> which will initialize a 2D viewer.

Utils and classes to load chem resources embedded or linked in HTML page. The chem resources (usually a formatted file (.mol, .cml...) or a formatted string) can be embedded in <script> tag:

<script id="chem1" type="chemical/x-mdl-molfile">
Untitled Document-1
ChemDraw09151219572D

2  1  0  0  0  0  0  0  0  0999 V2000
 -0.4125    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  0.4125    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
1  2  1  0
M  END
</script>

or linked in by <script> or <link> tag as the follows:
<script id="chem2" type="chemical/x-kekule-json" src="externalMol.kcj"></script>
<link id="chem3" type="chemical/x-cml" href="external.cml" /> Afterwards, user can ref to chem resource by ID directly in HTML code, such as:
<div data-kekule-role="Kekule.ChemWidget.Viewer2D" data-chem-obj="url(#chem1)" /> which will initialize a 2D viewer.

This file simulates the class-based inheritance, most of the code is borrowed from Prototype lib. My own property system borrowed form WebShow framework is also added here.

Classes and methods to support serialization of ObjectEx.

Utilities to handle XML and JSON data. Borrowed from WebShow.XML and WebShow.JSON.

Generally we can use getElementsByTagName, getAttribute to analysis a DOM tree. If the DOM has namespaces, getElementsByTagNameNS and getAttributeNS should be used instead. However, IE (and MSXML) does not support those NS methods. So this file is trying to provide a cross-browser solution.

Utility functions about DOM, Script and so on.

Contains classes and functions help to analysis text format chemical data, especially the line/column fixed ones such as MDL MOL/SDF/RXN.

Some common utility functions.